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Proteomics and Protein Markers |
1 Division of Clinical Biochemistry, Innsbruck Biocenter, Innsbruck Medical University, Innsbruck, Austria; 2 Department of Medical and Chemical Laboratory Diagnostics, Innsbruck Medical University, Innsbruck, Austria; 3 Department of Internal Medicine, Clinical Division of Cardiology, Innsbruck Medical University, Innsbruck, Austria.
aAddress correspondence to this author at: Division of Clinical Biochemistry, Innsbruck, Biocenter, Innsbruck Medical University, Fritz-Pregl-Str. 3, A-6020 Innsbruck, Austria. Fax 43-512-9003-73300; e-mail herbert.lindner{at}i-med.ac.at.
| Abstract |
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Methods: For affinity chromatography, we coupled Fab' fragments of polyclonal sheep antibodies specific for N-terminal proBNP (NT-proBNP) epitope 1–21 to silica beads. We connected a column (10 mm x 0.8 mm inner diameter) packed with these beads to a trypsin reactor and used a preconcentrator in combination with a fritless nanospray column to perform MS analyses of proBNP forms in preextracted and non-preextracted samples of plasma from patients with severe heart failure (HF). We used Western blotting in deglycosylation experiments to confirm the shifts in proBNP and NT-proBNP masses.
Results: Tandem MS experiments demonstrated the presence of both NT-proBNP and circulating proBNP in preextracted samples of plasma from patients with severe HF, and Western blotting analyses revealed 2 bands of approximately 23 kDa and 13 kDa that shifted after deglycosylation to positions that corresponded to the locations of recombinant proBNP and synthetic NT-proBNP.
Conclusions: We obtained clear evidence for circulating proBNP in patients with severe HF and provided the first demonstration of O-glycosylation of NT-proBNP. The higher molecular masses for NT-proBNP and proBNP observed in the Western blotting analyses than those expected from calculations can be explained by O-glycosylation of these peptides in vivo.
| Introduction |
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The specific forms of the proBNP protein (amino acid residues 1–108) that occur in human blood are not yet clear. proBNP is the precursor hormone synthesized in cardiomyocytes after ventricular overload or an increase in wall tension, and the mechanism for its cleavage is still not fully understood. At the time of secretion into the blood or later, a serine protease is thought to cleave proBNP on an equimolar basis into the physiologically active BNP form [proBNP residues 77–108 (BNP 32)] and a form believed to be physiologically inactive, NT-proBNP (residues 1–76)(10). Previous studies of proBNP forms in human blood have yielded controversial results. Besides BNP 32 and NT-proBNP, researchers have also reported the presence of various other truncated forms of these peptides in human blood(11)(12)(13). One study did not find BNP 32 at all(14). Other studies suggested that high molecular weight BNP forms (10–36 kDa) and low molecular weight forms (3.7–4 kDa) were monomers and trimers of proBNP and monomeric BNP, respectively(11)(12)(15). Another study found NT-proBNP forms truncated at the C- and N-terminal ends but found no evidence for the presence of proBNP(13). The drawback of most of these studies is that they used indirect assay methods, such as immunoassays after HPLC separation, to demonstrate the different forms of circulating proBNP.
A recent study(16) demonstrated recombinant proBNP of Chinese hamster ovary cells to be O-glycosylated at 7 specific sites, and a Western blotting analysis has shown the presence of O-glycosylated proBNP in the plasma of HF patients. Little is known about the biological function of glycosylated proBNP. Glycosylation could be important in several areas that are related to the biology of BNP, including its proteolytic processing, the half-life, and its variation across disease states. Furthermore, because the commercially available assays currently use synthetic or recombinant calibrant peptides that are not glycosylated, the glycosylation of proBNP forms in vivo may adversely influence the performance of these assays.
The aims of this work were to determine what proBNP forms circulate in the blood of patients with severe HF and to investigate whether circulating NT-proBNP is O-glycosylated. To overcome the difficulties of previous studies that used indirect methods, we developed a new affinity chromatography method that can be used in combination with nano–liquid chromatography electrospray ionization tandem mass spectrometry (nano-LC–ESI–MS/MS).
| Materials and Methods |
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affinity chromatography
To capture proBNP and its N-terminal forms from samples of human plasma, we developed an affinity chromatography method that used Fab' fragments of polyclonal sheep 1–21 antibodies [i.e., specific for epitope 1–21; Roche Diagnostics (see package insert)](17)(18)(19). First, F(ab')2 1–21 antibodies dissolved in buffer (20 mmol/L sodium phosphate buffer, 20 mmol/L NaCl, and 56 g/L saccharose, pH 7.4) were reduced to Fab' 1–21 fragments with 2-mercaptoethylamine hydrochloride (final concentration, 100 mmol/L; final pH, 6.0; Sigma-Aldrich) under final buffer conditions (15 mmol/L sodium phosphate, pH 6, 15 mmol/L NaCl, and 50 g/L saccharose) for 1 h at 37 °C. Purified Fab' 1–21 was isolated by size-exclusion chromatography (see Fig. 1
in the Data Supplement that accompanies the online version of this article at http://www.clinchem.org/content/vol54/issue5) on a G3000SWXL column (300 mm x 7.8 mm inner diameter; Tosoh Bioscience). We eluted Fab' fragments isocratically with 50 mmol/L sodium phosphate buffer (pH 7.2) at a flow rate of 0.5 mL/min and collected the fractions. The antigen-binding properties of the isolated Fab' 1–21 fragments were verified by antibody competition in an NT-proBNP assay (Elecsys 1010; Roche Diagnostics) with NT-proBNP samples spiked with purified Fab' 1–21 fragments. After an equilibration time of 10 min to ensure antigen binding, we measured the concentration of the remaining NT-proBNP. Secondly, the purified Fab' 1–21 fragments were coupled to beads following the approach of Guzman et al.(20)(21), with the exception that amino-derivatized silica beads (bead size, 7 µm; pore size, 30 nm) were used. After washing the silica beads (16 g/L) 3 times with sodium phosphate buffer (50 mmol/L, pH 7.2), we covalently bound 5 g/L sulfo-succinimidyl 4-(N-maleimidomethyl)cyclohexane-1-carboxylate (S-SMCC)(Sigma-Aldrich) to the free amino groups for 1 h at 30 °C. After removing excess reagent by washing with the phosphate buffer, we added 3–5 mg of purified Fab' dissolved in sodium phosphate buffer (50 mmol/L, pH 7.2) and incubated the solution for 40 h at room temperature. The beads were centrifuged and washed with the phosphate buffer, and the remaining binding sites of bound S-SMCC were blocked by incubating with 10 mmol/L 2-mercaptoethanol for 1 h at room temperature. Finally, the beads were washed and resuspended in the phosphate buffer. A polyetheretherketone (PEEK®) column (10 mm x 0.8 mm inner diameter) constructed in house was packed with this slurry, equilibrated at 4 °C in 50 mmol/L phosphate buffer (pH 7.2) containing 0.1 g/L sodium azide and stored at this temperature. The column was regenerated for 30 min after each run with 150 mmol/L NaCl and then equilibrated with 50 mmol/L sodium phosphate buffer (pH 7.2). We evaluated the quality of the affinity chromatography column by measuring the NT-proBNP concentration in the flow-through, wash, and eluate of plasma extracts produced by SPE. These solutes were diluted 1:50 in plasma for measurements of NT-proBNP.
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mass spectrometry
Plasma samples (n = 7) from patients with severe HF were either preextracted via SPE or simply diluted before injection with equal volumes of 50 mmol/L sodium phosphate buffer (pH 7.2) without any preextraction steps. One milliliter of SPE sample or 2 mL of the diluted plasma was loaded onto the affinity chromatography column (flow rate, 13 µL/min at room temperature). Samples were injected with the mobile phase (50 mmol/L sodium phosphate buffer, pH 7.2) for 75 min for SPE extracts and 170 min for the diluted plasma. During this phase, proBNP and its N-terminal fragments were allowed to bind to the covalently immobilized Fab' 1–21, and the noninteracting material was washed out of the column and discarded. To further remove nonspecifically bound material, we rinsed the column with a high-salt buffer (50 mmol/L sodium phosphate, 500 mmol/L NaCl, pH 7.2, containing 5 mL/L Nonidet P-40) for 30 min and then rinsed the column with sodium phosphate buffer (50 mmol/L, pH 7.2) for 5 min at a flow rate of 25 µL/min. Finally, we eluted the proBNP and its fragments with a solution of 100 mL/L acetonitrile and 50 mL/L acetic acid in HPLC-grade water (pH 2.4) at room temperature (flow rate, 13 µL/min). For MS identification of proBNP, we treated the eluate with 5 mmol/L dithiothreitol and 20 mmol/L iodoacetamide (final concentrations) for 30 min at 37 °C) and finally digested the eluate with trypsin. The trypsin reactor was regenerated with 150 mmol/L NaCl and stored at 4 °C in 20 mmol/L sodium acetate buffer (pH 5.0) containing 0.1 g/L sodium azide when not in use. We used a preconcentrator in combination with a fritless nanospray column (100 µm inner diameter x 365 µm outer diameter, packed to 10 cm with 5-µm C18 material) constructed in house to analyze the digested eluates by MS (LTQ ion trap instrument; Thermo Finnigan) at room temperature in accordance with the methods of Sarg et al.(22). For MS analysis, we used an UltiMate 3000 pump (Dionex) for nano-HPLC separation at a flow rate of 300 nL/min with gradient elution (solvent A, 1 mL/L formic acid in water; solvent B, aqueous solution of 850 mL/L acetonitrile and 1 mL/L formic acid) starting at 4% B. The concentration of solvent B was maintained at 4% for 2 min, increased linearly to 50% over the next 50 min, and increased from 50% to 100% over the last 10 min. We identified the proteins with the aid of the SEQUEST algorithm in the Bioworks 3.3 software package (Thermo-Electron Corporation) and a human protein database. We further evaluated the identified peptides by analyzing the charge state vs the cross-correlation number. The criteria for the positive identification of peptides were a cross-correlation number >1.5 for singly charged ions, >2.0 for doubly charged ions, and >2.5 for triply charged ions. Only the best matches were considered. Specific cleavage sites for trypsin were selected, and MS/MS tolerances of ±1 Da were allowed.
deglycosylation
For Western blot analysis (n = 5), peptide fractions obtained from affinity chromatography were incubated overnight at 37 °C with 0.25 mU O-glycosidase, 0.25 mU N-acetylneuraminidase, and 0.25 mU β-galactosidase in 50 mmol/L phosphate buffer, pH 6.0. All enzymes were obtained from Roche Diagnostics.
western blot analysis
Deglycosylated and non-deglycosylated peptide fractions, Biotinylated SDS-PAGE Standards (cat. no. 161-0319, Bio-Rad Laboratories), synthetic NT-proBNP (Roche Diagnostics), and recombinant proBNP (cat. no. 8PRO8, HyTest) were loaded onto SDS-PAGE (1.0 g SDS/L, 4% stacking, 15% resolving gel) and electrophoresed at 120 V and 15 °C. Peptides were transferred onto a nitrocellulose membrane for Western blotting for 75 min at 100 V and 4 °C. The nitrocellulose membrane was blocked overnight with Roti®-Block (cat. no. A151.1, Carl Roth), washed with 5 mL/L polysorbate 20 (Tween 20; cat. no. 822184, Merck) in Tris-buffered saline (88 g/L NaCl, 79 g/L Tris, pH adjusted to 7.5 with 5 mol/L HCl), and then incubated with polyclonal sheep antibody specific for NT-proBNP 1–21 (1:9 000 dilution; Roche Diagnostics) for 1 h at room temperature. After washing the nitrocellulose membrane with 10 mL/L Tween 20 in Tris-buffered saline, we added secondary antibody (peroxidase-conjugated rabbit antisheep IgG; cat. no. 313-035-003, Jackson ImmunoResearch Europe) to a final dilution of 1:5000 and streptavidin–horseradish peroxidase conjugate (Streptavidin-POD; cat. no. 11089153001, Roche Diagnostics) at a final dilution of 1:6000 dilution. We incubated the membrane for 1 h at room temperature, and washed the membrane again with 5 mL/L Tween 20 in Tris-buffered saline. We used Amersham ECLTM Western Blotting Detection Reagents (cat. no. RPN2106, GE Healthcare/Amersham Biosciences) for electrochemiluminescent visualization of bands on x-ray films.
| Results |
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This affinity-based nano-LC–ESI–MS/MS approach to the assay of preextracted plasma samples enabled us to demonstrate the presence of proBNP in the circulation. The base peak chromatogram reveals the presence of several different peptide fragments obtained after tryptic digestion of the affinity chromatography–trapped plasma sample (Fig. 2A
). We found proBNP peptide fragments in the MS/MS spectra that covered 59.2% of the amino acid sequence of NT-proBNP 1–76 (Fig. 2D
; see Fig. 2
, A–H, in the online Data Supplement); however, we also identified 2 additional peptide fragments in the BNP 32 region (80–89 and 94–103) (Fig. 2, B and C
). We calculated a coverage of 60.2% of the proBNP 1–108 sequence (i.e., NT-proBNP 1–76 plus BNP 32). When we applied a non-preextracted plasma sample directly, we also identified NT-proBNP, with 47% coverage of the NT-proBNP sequence.
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The MS results were corroborated in the Western blotting analysis. By extracting plasma with the SPE method, we achieved an effective preconcentration of NT-proBNP in plasma samples, which is mandatory for Western blotting analysis. After trapping proBNP forms by the affinity chromatography method and subsequent eluting the forms, we identified 2 major bands (approximately 23 kDa and 13 kDa) by Western blotting of samples from HF patients (n = 5; Fig. 3
). After deglycosylation, these bands shifted to molecular weights of approximately 13 kDa and 6.5 kDa, corresponding to the positions where we detected recombinant proBNP and synthetic NT-proBNP in our SDS-PAGE gels. These marked shifts in peptide mass of 10 kDa and 6.5 kDa, respectively, and the MS results for circulating proBNP and NT-proBNP indicate that both proBNP and NT-proBNP occur as glycosylated monomers in human blood. Additionally, the MS results in combination with the Western blotting results demonstrate that proBNP is present in the circulation of patients with severe HF.
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| Discussion |
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Earlier studies(23)(24)(25)(26)(27) reported the presence of BNP 32 in the circulation, together with an ill-defined high molecular weight BNP species of 12–15 kDa, possibly proBNP 1–108. These studies required the extraction of considerable volumes of human plasma (up to 19 mL) with Vycor glass powder or C18 cartridges before the BNP species could be separated by size-exclusion HPLC. The investigators then studied the different fractions with self-developed competitive RIAs by using calibrator peptides corresponding to the N terminus of proBNP (amino acid residues 1–13) to demonstrate the presence of proBNP in specific fractions. In addition, a competitive RIA that used antibodies directed against the middle region of proBNP (residues 62–76) detected a third form, approximately 9 kDa in size and most likely NT-proBNP(26)(27). Yandle et al.(15) used a competitive BNP RIA after separation by reversed-phase HPLC and found a high molecular weight BNP species (10 kDa) and a low molecular weight BNP species (3.7 kDa) only in the plasma of HF patients; healthy individuals had BNP concentrations that were not sufficiently high for HPLC-RIA analysis. In more recent studies, Shimizu et al.(11)(12) also reported both high molecular weight and low molecular weight BNP species in congestive HF patients. In contrast to Yandle et al., the high molecular weight form found by Shimizu et al. was much larger, 36 kDa—3 times the size of proBNP (12 kDa). Both peaks found by gel-filtration HPLC showed immunoreactivity in a more sensitive IRMA (Shionoria BNP assay with monoclonal antibodies against BNP 14–21 and BNP 27–32). Interestingly, after analyzing the smaller peak by reversed-phase HPLC and IRMA, the investigators detected immunoreactive peaks only for species smaller than BNP 32, which were assumed to be digests of proBNP or BNP(11). The high molecular weight peak was thought to be a trimer of proBNP(12). A recent study that used plasma samples from HF patients that were not preextracted and were applied directly to gel-filtration fast protein liquid chromatography columns confirmed the presence of a major peptide of 37 kDa, a minor peptide of 4–6 kDa, and a 25-kDa peptide(28). Sensitive sandwich immunofluorescence assays for proBNP, BNP, or NT-proBNP developed by the investigators recognized these peptides. In contrast to earlier studies, in which only nonspecific immunoassays could be used to infer the molecular forms, we have used affinity-based nano-LC–ESI–MS/MS to directly identify the amino acid sequences of the proBNP forms occurring in the blood of HF patients. In particular, we have demonstrated the presence of proBNP and NT-proBNP in the blood on the basis of the combined results of 2 different methods. The MS analysis identified the amino acid sequences of the proBNP fragments obtained after tryptic digestion, and the Western blotting analysis permitted the immunologic detection of proBNP. In the MS analysis, we found the 2 peptide fragments of BNP 32 (80–89 and 94–103) and located 8 additional fragments in the NT-proBNP 1–76 region. This remarkable finding can be explained in 2 ways: It can arise from the tryptic digestion of circulating proBNP or from the cleavage of circulating BNP 32 itself. Because the polyclonal sheep 1–21 antibodies from Roche Diagnostics are specific for the 1–21 epitope of NT-proBNP 1–76 and do not cross-react with BNP 32 (according to the manufacturers package insert)(17), this small peptide fragment is evidence for the occurrence of circulating proBNP in human plasma. In a very recent study(29), proBNP 1–108 was found in healthy individuals and HF patients by means of a very specific ELISA that uses a monoclonal antibody against the cleavage site of proBNP 1–108 (Hinge76, against amino acid residues 75–80) and exhibits no cross-reactivity with either BNP 32 or NT-proBNP 1–76.
Neither this recently described indirect method nor our present study can definitively exclude the presence of trimerized proBNP. Nevertheless, we doubt that proBNP circulates as a trimer, although our MS data cannot distinguish between monomers or multimers and although multimers would have been separated as monomers under the denaturing conditions of our SDS-PAGE system. We strongly suspect that the high molecular weight BNP described earlier may be due to O-glycosylation of proBNP, which would increase its molecular mass. In fact, we found this shift in molecular mass in each of the plasma samples we investigated by Western blotting after we had deglycosylated the proBNP and NT-proBNP trapped on the affinity chromatography column. Thus, proBNP showed a shift of approximately 10 kDa to a molecular mass of 13 kDa, which is the same position where we found recombinant proBNP 1–108; NT-proBNP shifted approximately 6.5 kDa to a position where we found synthetic NT-proBNP 1–76. This O-glycosylation of human proBNP was also shown recently by Western blotting after the immunoprecipitation of plasma from HF patients with a monoclonal antibody specific for amino acid residues 81–91 of proBNP(16). The shift in proBNP molecular weight observed after deglycosylation in the latter study was comparable to our results. We have extended these findings by demonstrating that NT-proBNP is also O-glycosylated in human blood. Additionally, Crimmins(30) used sedimentation equilibrium ultracentrifugation and circular dichroism methods to demonstrate that synthetic NT-proBNP dissolved in phosphate-buffered saline cannot oligomerize by a coiled-coil reaction. Specifically, amino acid residues 17–38 were thought to form coiled-coil motifs(31). Because NT-proBNP and proBNP share these residues, Crimmins results may be extended to proBNP as well, further supporting the idea that proBNP is in a monomeric state. The molecular masses of the peptides detected in our Western blotting experiments provide strong evidence for, but do not prove, the occurrence of both monomeric NT-proBNP and proBNP in the blood. Of note is that the synthetic NT-proBNP used for the Western blot analysis showed the correct molecular mass of 8.4 kDa in the MS analysis, whereas synthetic NT-proBNP migrates faster in the SDS gel used for Western blot analysis, in the size range of approximately 6.5 kDa. This discrepancy is easily explained by the limited resolution of the SDS gel. Nevertheless, the decrease in molecular mass observed after deglycosylation was obvious, and MS unambiguously identified NT-proBNP and proBNP derived from the same sample.
We cannot draw conclusions about all of the possible BNP forms that occur in human blood, because we trapped proBNP forms with an antibody (NT-proBNP 1–21) incapable of capturing C-terminal forms of proBNP. A recent study with an analysis by nano-LC electrospray ionization Fourier transform ion cyclotron resonance MS indicated that no BNP 32 is present in HF patients(14). These investigators used immunoaffinity purification with a BNP antibody that yielded a recovery of <10%. Despite the sensitivity of this analytical method (detection limit of 15 fmol BNP), the low recovery rate could have led to insufficient concentration of the sample, and thus these investigators may have missed the detection of BNP. We used a different technique for trapping proBNP forms. The method we have described achieves highly specific coupling of Fab' fragments to silica beads. We can assume a correct orientation of the active antibody side, which is crucial for optimal alignment to and recognition of the antigen, especially for capturing low-abundance peptides at sufficiently high concentrations for further analysis. Our results yielded an even a higher recovery than reported by Schellenberger et al.(16) (86% vs 75%), who used immunoprecipitation. The immunoprecipitation method has the disadvantage of the presence of some loose antibody-coupled beads, which can hinder analysis with MS methods.
In summary, our laboratory has used a new affinity-based nano-LC–ESI–MS/MS approach to provide the first direct demonstration of the presence of proBNP in the plasma of HF patients; truncated NT-proBNP was also found with this method. Furthermore, we corroborated that both proBNP and NT-proBNP are O-glycosylated in human blood. O-glycosylation is responsible for considerable shifts in mass to higher molecular weights that could be misinterpreted as oligomerized states of these peptides. These findings may be of particular relevance in clinical diagnosis and highlight the importance of using well-characterized and properly immobilized and oriented antibodies in immunoassays to achieve optimal diagnostic performance.
| Acknowledgments |
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Financial Disclosures: None declared.
Acknowledgments: The authors thank Klaus Hallermayer and Uwe Kobold for helpful discussions.
| Footnotes |
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3 We dedicate this article to the memory of Professor Bernd Puschendorf. ![]()
1 Nonstandard abbreviations: BNP, B-type natriuretic peptide; NT-proBNP, N-terminal pro–B-type natriuretic peptide; nano-LC–ESI–MS/MS, nano–liquid chromatography electrospray ionization tandem mass spectrometry; HF, heart failure; BNP 32, BNP form consisting of proBNP amino acid residues 77–108; SPE, solid-phase extraction; S-SMCC, sulfo-succinimidyl 4-(N-maleimidomethyl)cyclohexane-1-carboxylate. ![]()
| References |
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The following articles in journals at HighWire Press have cited this article:
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M Schou, U Alehagen, J P Goetze, F Gustafsson, and U Dahlstrom Effect of estimated glomerular filtration rate on plasma concentrations of B-type natriuretic peptides measured with multiple immunoassays in elderly individuals Heart, September 15, 2009; 95(18): 1514 - 1519. [Abstract] [Full Text] [PDF] |
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J. Mair Clinical Significance of Pro-B-Type Natriuretic Peptide Glycosylation and Processing Clin. Chem., March 1, 2009; 55(3): 394 - 397. [Full Text] [PDF] |
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L. Frankenstein, A. Remppis, M. Nelles, B. Schaelling, D. Schellberg, H. Katus, and C. Zugck Relation of N-terminal pro-brain natriuretic peptide levels and their prognostic power in chronic stable heart failure to obesity status Eur. Heart J., November 1, 2008; 29(21): 2634 - 2640. [Abstract] [Full Text] [PDF] |
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